Bioinformatics with Python Cookbook
Bioinformaticsisanactiveresearchfieldthatusesarangeofsimple-to-advancedcomputationstoextractvaluableinformationfrombiologicaldata.Thisbookcoversnext-generationsequencing,genomics,metagenomics,populationgenetics,phylogenetics,andproteomics.You'lllearnmodernprogrammingtechniquestoanalyzelargeamountsofbiologicaldata.Withthehelpofreal-worldexamples,you'llconvert,analyze,andvisualizedatasetsusingvariousPythontoolsandlibraries.ThisbookwillhelpyougetabetterunderstandingofworkingwithaGalaxyserver,whichisthemostwidelyusedbioinformaticsweb-basedpipelinesystem.Thisupdatededitionalsoincludesadvancednext-generationsequencingfilteringtechniques.You'llalsoexploretopicssuchasSNPdiscoveryusingstatisticalapproachesunderhigh-performancecomputingframeworkssuchasDaskandSpark.Bytheendofthisbook,you'llbeabletouseandimplementmodernprogrammingtechniquesandframeworkstodealwiththeever-increasingdelugeofbioinformaticsdata.
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