- Bioinformatics with Python Cookbook
- Tiago Antao
- 81字
- 2021-06-10 19:01:45
Getting ready
If you are using Jupyter Notebook, then open Chapter02/Basic_Sequence_Processing.ipynb. If not, you will need to download a FASTA sequence. We will use the human Lactase (LCT) gene as an example; you can get this using your knowledge from the previous recipe, by using the Entrez research interface:
from Bio import Entrez, SeqIO
Entrez.email = "your@email.here"
hdl = Entrez.efetch(db='nucleotide', id=['NM_002299'], rettype='fasta') # Lactase gene
seq = SeqIO.read(hdl, 'fasta')
Note that our example sequence is available on the Biopython sequence record.
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